The amp ground is good although longer then I would use.
Is it possible to shorten it?
Power and ground cable gauge is good.
I would replace the AGU fuse and holder, with an ANL, [wafer] fuse and holder, I recommend the post type, [nut and bolt] fuse holders, like this… http://www.scosche.com/products/sfID1/151/sfID2/160/productID/1765
I would also recommend, [if not already done] that the ring terminals are soldered to the power and ground cables.
I would “re-do” the main power and ground connections, starting with the grounds.
Remove the batt. for access to chassis ground, remove ground cable at both the chassis and engine, clean all contact surfaces and reconnect the ground cable and reinstall the batt., do the same with the main power connections…
Batt. to engine bay fuse box, alt. to engine bay fuse box, [both ends] and the main fuses in the engine bay fuse box, [the ones screwed down] same as the grounds, remove clean reconnect.
You must “beef up” the batt. to chassis ground, add a 4ga ground from batt. to chassis, shock tower studs work well for the chassis end.
Remember, you are running a 4ga power off the batt. but have only the stock, [6ga maybe] ground from the batt. to the chassis.
Once the above is done have a proper load check done, a meter will tell you very little about the charging system, 14.5V is OK, but what is the current, [amperage] 25A will not get you far.
I always get a little concerned when alt. voltage is over 14.5V, possible voltage regulator issue.
Because you had dimming problems before amp was installed you have either power or ground connection problems or a bad alt., that’s why you redo the connections before doing the load check.
If alt. needs to be replaced, replace it with a high output alt. and you will not need the cap.
If once the above work has been done and the alt. checks out, [load check] and if you still have some dimming issues, add a 1 farad cap. 94