Clutch or tranny making a weird noise!!

Help, My tranny or clutch is making weird clicking or tapping noise. I replaced the cv axles, and I ordered a Flywheel and waiting to get a clutch. Any possible suggestions. There is a stock flywheel witha ACT clutch. Whenever i put it into gear it makes a weird ass noise like clunk or something. It shifts fines, and when in neutral the nosie isn’t there.